Explore projects

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Fits gyral white matter fibre configuration with a continuous vector field

FSLeyes, the FSL image viewer.

Fill each atlas region with any value.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Remove stupidly high intensities from MRI images which might negatively affect registration.

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

Sample script for converting CURRY files to the BIDS format.

Clone of Maria Ruesseler's code for the analysis of the continuous visual EEG task with manipulations of trial frequency and trial length

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Command line tool to scan a structured directory and print a table highlighting gaps.

Command line tool to scan a dataset and print a table highlighting gaps.

Neonatal diffusion MRI (dMRI) data analysis pipeline

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford