Explore projects

Code to accompany Uncertainty in denoising of MRSI using low rank methods, Clarke WT and Chiew M 2021.

Reads Siemens .dat 'twix' raw data files. Python port of Philipp Ehses' Matlab tool mapVBVD.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Tools for low rank denoising of MRSI.

Talks, practicals, and other materials for the 2020 WIN PyTreat

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Fits gyral white matter fibre configuration with a continuous vector field

FSLeyes, the FSL image viewer.

Fill each atlas region with any value.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Remove stupidly high intensities from MRI images which might negatively affect registration.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Command line tool to scan a structured directory and print a table highlighting gaps.