Explore projects

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Monte Carlo MR microstructure and sequence simulator

WMH and lesion segmentation tool

An fsleyes plugin for NIfTI-MRS data

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Computational modelling course taught as part of the WIN graduate programme.

Python implementation of FSL's FIX tool for denoising

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Multi-MOdal Registration Framework