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use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

Fits gyral white matter fibre configuration with a continuous vector field

Repository for spec2nii test data.

B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.

Fork of https://github.com/ox-it/django-webauth with updates for modern Django

strokeseg is a python package + command line program to identify stroke in clinical brain images.

Grid submission wrapper

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

Implementation of Bayesian EstimatioN of CHange

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Python-based asymmetric fibre orientation distributions (aFODs) estimation library

A repo of folders containing Vagrant files that define useful Virtualbox recipes

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.

Tools for low rank denoising of MRSI.

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.