Explore projects

Code and pipeline for the extraction of fibre dispersion from MDE data

Talks, practicals, and other materials for the 2020 WIN PyTreat

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

FSL releases of ihuszar/tirl - new changes are to be manually added to the main branch. All other branches are for historical purposes only.

Code to support the BigMac dataset: an open resource combining multi-contrast MRI and microscopy in a macaque brain.

The FMRIB UKBiobank Normalisation, Processing And Cleaning Kit

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Python implementation of FSL's FIX tool for denoising

A growing and evolving collection of image processing scripts that are based on TIRL.

MRS density matrix simulator

FastPtx: a python pTx pulse design tool for freely optimizing RF and gradient pulses with autodifferentiation