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Talks, practicals, and other materials for the 2020 WIN PyTreat

Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Repository for code and materials from 'A macroscopic link between tract myelination and tract physiology during action reprogramming' by Lazari et al.

Repository for code and materials from 'Reassessing associations between white matter and behaviour with multimodal microstructural imaging' by Lazari et al.

a place for general things that I'd like to share with people (tutorials etc)

Talks, practicals, and other materials for the 2020 WIN PyTreat

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Sample script for converting CURRY files to the BIDS format.

Matlab code to perform Hidden Markov modelling of entorhinal cortex optogenetic-fMRI.