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Code relating to reference: AFD Howard, J Mollink, M Kleinnijenhuis, M Pallebage-Gamarallage, M Bastiani, M Cottaar, KL Miller & S Jbabdi, Joint modelling of diffusion MRI and microscopy, Neuroimage, 2019.

Additional large downloads required for the dHCP neonatal fMRI pipeline

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.

Talks, practicals, and other materials for the 2020 WIN PyTreat

MRS basis spectra for WIN sequences generated using FSL-MRS's simulator.

Scripts for QSM processing of the UK Biobank swMRI data

A GUI for the popular fslstats Command line program