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FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Computational modelling course taught as part of the WIN graduate programme.

Multi-MOdal Registration Framework

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

WMH and lesion segmentation tool

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

repo of files sorted by each meeting