Explore projects

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

FSL release management infrastructure

WMH and lesion segmentation tool

The WIN open science tool to package up, and share data and analyses

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

FSL documentation

Monte Carlo MR microstructure and sequence simulator

An fsleyes plugin for NIfTI-MRS data

Reconstruction code for MRSI including Uzay Emir's COMCEPT at 7T

Computational modelling course taught as part of the WIN graduate programme.