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A repo of folders containing Vagrant files that define useful Virtualbox recipes

This flashing checkerboard script presents black screen vs flashing checkerboards in a block design. You will need a button box / gamepad device to trigger and record responses. Participant fixation is controlled via a simple fixation task.

The FSL installer (for conda-based FSL releases)

Binocular Energy Model for binocular disparity detection in V1 complex cells

Python-based asymmetric fibre orientation distributions (aFODs) estimation library

FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

bet for clinical CT images

Tools for low rank denoising of MRSI.

This repository contains processing code and result files associated with the following publication: Cortical morphology and white matter tractography of three phylogenetically distant primates: Evidence for a simian elaboration

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

FSL-MRS code for the 2021 diffusion weighted MRS workshop.

Code used for the analyses presented in the paper "White matter hyperintensities classified according to intensity and spatial location reveal specific associations with cognitive performance" by Melazzini et al.,