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Reconstruction code for MRSI including Uzay Emir's COMCEPT at 7T

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

CLI to download entire projects from openneuro.org

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Repository associated with the following publication: Social prediction modulates activity of macaque superior temporal cortex Lea Roumazeilles, Matthias Schurz, et al

Experimental paradigm from "Associative Learning of Social Value", Behrens et al., Nature 2008, coded in Presentation.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Guidelines for using the open science "community" GitLab subgroup

This repository contains the E-Prime script and stimuli from the functional MRI task for the UK Biobank Brain Imaging study.