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FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

FSL release management infrastructure

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Diffusion models implemented in the cudimot framework. See https://users.fmrib.ox.ac.uk/~moisesf/cudimot/ for more details.

CUSP : A C++ Templated Sparse Matrix Library

This folder contains practical sessions from a course taught in the Experimental Psychology department at the University of Oxford on computational modelling of behavioural data, building on the paradigm of Behrens et al. (NN, 2007).

Matlab/Cogent version of Information Seeking paradigm from Hunt et al., PLoS Biology 2016.

Experimental paradigm from "Associative Learning of Social Value", Behrens et al., Nature 2008, coded in Presentation.

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

Fill each atlas region with any value.