Explore projects

Monte Carlo MR microstructure and sequence simulator

An fsleyes plugin for NIfTI-MRS data

WMH and lesion segmentation tool

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Computational modelling course taught as part of the WIN graduate programme.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Diffusion models implemented in the cudimot framework. See https://users.fmrib.ox.ac.uk/~moisesf/cudimot/ for more details.

CUSP : A C++ Templated Sparse Matrix Library

This folder contains practical sessions from a course taught in the Experimental Psychology department at the University of Oxford on computational modelling of behavioural data, building on the paradigm of Behrens et al. (NN, 2007).

Matlab/Cogent version of Information Seeking paradigm from Hunt et al., PLoS Biology 2016.

Experimental paradigm from "Associative Learning of Social Value", Behrens et al., Nature 2008, coded in Presentation.