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The FSL Python Library

Neonatal diffusion MRI (dMRI) data analysis pipeline

Declative pipelines based on Filetrees

My first python package, random utilities

Code relating to reference: AFD Howard, J Mollink, M Kleinnijenhuis, M Pallebage-Gamarallage, M Bastiani, M Cottaar, KL Miller & S Jbabdi, Joint modelling of diffusion MRI and microscopy, Neuroimage, 2019.

Additional large downloads required for the dHCP neonatal fMRI pipeline

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

Fits gyral white matter fibre configuration with a continuous vector field

Repository for spec2nii test data.

Repository associated with the following publication: Social prediction modulates activity of macaque superior temporal cortex Lea Roumazeilles, Matthias Schurz, et al

B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford