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This is a project for hierarchical modelling of white matter tract useful for fixel based analysis.

Python implementation of FSL's FIX tool for denoising

The FSL installer (for conda-based FSL releases)

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Implementation of Bayesian EstimatioN of CHange

An cut-down version of the FSL FEAT GUI for educational purposes

This project aims to transfer the old tbss code from bash script to python and leverage fsl-pipe and fsl file-tree for pipeline creation and file management.

MRS density matrix simulator

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.

FastPtx: a python pTx pulse design tool for freely optimizing RF and gradient pulses with autodifferentiation