Explore projects

The FSL Python Library

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Declative pipelines based on Filetrees

IHC analysis tools for MRI-microscopy comparisons

My copy of FSL/base

My personal utilities library

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

The legacy FSL installer script, used to install FSL versions 6.0.5.2 and older.

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

FSL based CT image processing programs

stochastic PROFUMO (sPROFUMO), to be integrated within PROFUMO

Boilerplate code and utilities for pyTorch.