Explore projects

Exploring, adapting, modifying the UK biobank imaging pipeline codes for the implementation on DPUK cohorts data

Taking AgeMapper to the next level - Multi(input)AgeMapper

Cluster-aware parallel python implementation of MIGP

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

The FSL Python Library

Reconstruction code for MRSI including Uzay Emir's COMCEPT at 7T

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Latex code repo for various write-ups done during my DPhil

The FSL Python Library

Code to accompany Uncertainty in denoising of MRSI using low rank methods, Clarke WT and Chiew M 2021.

Reads Siemens .dat 'twix' raw data files. Python port of Philipp Ehses' Matlab tool mapVBVD.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.