Explore projects
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Fidel Alfaro Almagro / UKB_UNCONFOUND_v2
Apache License 2.0Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.
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Remove stupidly high intensities from MRI images which might negatively affect registration.
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FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.
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Nicole Eichert / project_variability
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
Evan Edmond / print_partial_datasets
Apache License 2.0Command line tool to scan a structured directory and print a table highlighting gaps.
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open-science / analysis / print_partial_datasets
Apache License 2.0Command line tool to scan a dataset and print a table highlighting gaps.
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Matteo Bastiani / dHCP_neo_dMRI_pipeline_release
Apache License 2.0Neonatal diffusion MRI (dMRI) data analysis pipeline
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Nicole Eichert / project_larynx
MIT LicenseThis repository contains processing code for the following publication:
Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).
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get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank
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Triplanar U-Net Ensemble model for white matter hyperintensities segmentation
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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Nicole Eichert / project_msm
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FSL / strokeseg
BSD 3-Clause "New" or "Revised" Licensestrokeseg is a python package + command line program to identify stroke in clinical brain images.
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Taylor Hanayik / fsl_heal
BSD 3-Clause "New" or "Revised" Licenseuse enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.
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