Open requested to merge nichols/ukb_unconfound_v2:FixFLIPPEDSWIin_gen_init_data into master
gen_initial_workspace/script_initial_workspace.sh, before anything else is done, it is checked if
$CONFDATA/ID_FLIPPEDSWI.txt has been created, and if not, a serial computation is called to create this file with
./gen_FLIPPEDSWI/script_FLIPPEDSWI_serial.sh. However, the script is called directly without switching directories, resulting in a failure to find
./script_FLIPPEDSWI_subject.sh when called within
This PR adds the needed change of directories to let this run.