ENH: Command line quantification options

William Clarkerequested to merge
wclarke/fsl_mrs:enh/minor_enhancements into master

Changes for improved quantification interface and command line options.

  • Minor improvements in MRSI plotting and preprocessing routines using average spectra.
  • Added default relaxation values for 1.5 tesla.
  • You can now specify custom T1 and T2 values to fsl_mrs using the --t1-values and --t2-values.
  • The (t1/t2/tissue fraction) values used in the qunatification stage are now output as a quantification_info.csv file.
  • quantification_info.csv can be passed to any of --tissue_frac, --t1-values and --t2-values as inputs.

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