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FSL-MRS V2: Basis rework and dynamic fitting release

William Clarke requested to merge wclarke/fsl_mrs:enh/v2_dynamic_update into master

Major rework of basis and fitting script interaction. First release of dynamic MRS fitting.

Static fitting

  • Default macromolecules are now added through basis_tools script rather than fitting. Fitting does not alter basis at run time now.
  • Fixed bug in calculation of concentration covariances. New MC tests included.
  • Better and faster covariance estimation via analytical jacobian.
  • Update to QC SNR calculation to improve stability.

Dynamic fitting

  • Saved dynamic results now contain free parameter covariances.
  • New documentation for dynamic fitting
  • New fmrs_stats module and script for higher-level GLM analysis.

Other new features

  • Experimental SVS results dashboard - view the results of multiple SVS fits together in a single summary.
  • New documentation for dynamic fitting and all new features.
  • Refactored imports to improve CLI startup times
  • Conversion of LCModel raw formatted basis sets using basis_tools convert.

Merge request reports