Assorted dynamic processing and MRSI processing updates.

William Clarkerequested to merge
wclarke/fsl_mrs:enh/dynamic_preproc into master
  • Added fsl_mrs_proc mrsi-align which can perform frequency and phase alignment across voxels using cross correlation.
  • Added fsl_mrs_proc mrsi-lipid which can perform lipid removal using Bilgic et al's L2-regularised method.
  • fsl_mrs_proc fshift can now take NIfTI images of matched shape witht he --shifthz anf --shiftppm to apply per-voxel shifts.
  • Fixed bug with incorrectly calculated zero order phase when given in degrees.
  • Improved interface and options for dynamic fitting driven preprocessing.
  • Fixed minor bug in fsl_mrs_summarise
  • Fixed bug where quantification information wasn't generated if no tissue fractions were given.
  • Added warnings when quantification reference or water has zero integral.

Merge request reports