Explore projects

Talks, practicals, and other materials for the 2020 WIN PyTreat

The FSL Python Library

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

FSLeyes, the FSL image viewer.

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

CLI to download entire projects from openneuro.org

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.