Explore projects

FSLeyes, the FSL image viewer.

The FSL Python Library

Talks, practicals, and other materials for the 2020 WIN PyTreat

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

FSL documentation

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

Reconstruction code for MRSI including Uzay Emir's COMCEPT at 7T

Computational modelling course taught as part of the WIN graduate programme.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.