Explore projects

Computational modelling course taught as part of the WIN graduate programme.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

FSL documentation

Reconstruction code for MRSI including Uzay Emir's COMCEPT at 7T

An fsleyes plugin for NIfTI-MRS data

CUSP : A C++ Templated Sparse Matrix Library

The FSL Python library.

Cluster-aware parallel python implementation of MIGP

Additive Signal Change inference tool.

Fill each atlas region with any value.

Cluster-aware python implementation of dual-regression for CIFTI images.

The FSL Python Library

The FMRIB UK BioBank data processing library. ukbparse is no longer being developed - it has been superseded by funpack - https://git.fmrib.ox.ac.uk/fsl/funpack/

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).