Explore projects
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Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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Fidel Alfaro Almagro / UK_biobank_pipeline_v_1
Apache License 2.0Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.
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Fidel Alfaro Almagro / UKB_UNCONFOUND_v2
Apache License 2.0Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.
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Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism
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Fidel Alfaro Almagro / UK_biobank_pipeline_v_1.5
Apache License 2.0Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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Cassandra Gould van Praag / h2mri
Creative Commons Attribution 4.0 InternationalBRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).
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Gaurav Bhalerao / QC-paper
Apache License 2.0Updated -
preclinical-imaging / Bruker_7T_QSM_R2s_Pipeline_ExVivo_OpenSource
Apache License 2.0Updated -
FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford
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comp-cog-neuro / CCN Unfold
GNU General Public License v3.0 onlyUnfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.
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Tom Nichols / UK_biobank_pipeline_v_1
Apache License 2.0Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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a place for general things that I'd like to share with people (tutorials etc)
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Matlab code to perform Hidden Markov modelling of entorhinal cortex optogenetic-fMRI.
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Hossein Rafipoor / UK_biobank_pipeline_v_1
Apache License 2.0Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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