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The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

The WIN open science tool to package up, and share data and analyses

CLI to download entire projects from openneuro.org

repo of files sorted by each meeting

Multi-MOdal Registration Framework

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

Computational modelling course taught as part of the WIN graduate programme.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

Monte Carlo MR microstructure and sequence simulator

FSL release management infrastructure

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

Python implementation of FSL's FIX tool for denoising

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.