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Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

FSL documentation

repo of files sorted by each meeting

CLI to download entire projects from openneuro.org

WMH and lesion segmentation tool

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

The WIN open science tool to package up, and share data and analyses