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The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Diffusion models implemented in the cudimot framework. See https://users.fmrib.ox.ac.uk/~moisesf/cudimot/ for more details.