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This repository contains processing code and result files associated with the following publication: Cortical morphology and white matter tractography of three phylogenetically distant primates: Evidence for a simian elaboration

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Code used for the analyses presented in the paper "White matter hyperintensities classified according to intensity and spatial location reveal specific associations with cognitive performance" by Melazzini et al.,

FSLeyes, the FSL image viewer.

THIS REPOSITORY IS NO LONGER MAINTAINED - Docker images for FSLeyes testing are now stored in the fsl/fsleyes/fsleyes repository.

Mendelian randomisation meets neuroimaging

WIN Information Retrieval Engine

Download open access data sets from popular online repos. Part of WIN's open science initiative.

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

Educational material for the WIN Analysis Group

Jupyter notebook-based practicals for the 2018 WIN PyTreat

Collection of pipelines for T2w, DWI and QSM imaging for Merima's studies.

Tractograms and masks associated with Folloni et al., 2019 eLife

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Multimodal Image Segmentation Tool