Explore projects

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Jekyll just-the-docs theme example. Served at https://open.win.ox.ac.uk/pages/open-science/community/just-the-docs/

FSL-MRS code for the 2021 diffusion weighted MRS workshop.

get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

bet for clinical CT images

An experimental script for creating a cut-down ("slim") FSL installation.

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

Guidelines for using the open science "analysis" GitLab subgroup

Guidelines for using the open science "community" GitLab subgroup

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

Repository for spec2nii test data.

Repository associated with the following publication: Social prediction modulates activity of macaque superior temporal cortex Lea Roumazeilles, Matthias Schurz, et al

Space for the WIN Open Neuroimaging Community to build and share resources.

Served at https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community

Code to accompany Shi, Clare, Vannesjo (2021) Magnetic Resonance In Medicine

Repository for code and materials from 'Reassessing associations between white matter and behaviour with multimodal microstructural imaging' by Lazari et al.

Space for the WIN Open Neuroimaging Community to build and share resources.

Served at https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community