Explore projects

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

The FSL Python Library

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

Code to accompany Uncertainty in denoising of MRSI using low rank methods, Clarke WT and Chiew M 2021.

Jupyter notebook-based practicals for the 2018 WIN PyTreat

My personal utilities library

Reads Siemens .dat 'twix' raw data files. Python port of Philipp Ehses' Matlab tool mapVBVD.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

predict a GCA score in a CT image

An cut-down version of the FSL FEAT GUI for educational purposes

Triplanar U-Net Ensemble model for white matter hyperintensities segmentation

computes a gyral coordinate system (as well as many utilities to work with meshes)