Educational material for the WIN Analysis Group
Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme
Talks, practicals, and other materials for the 2020 WIN PyTreat
Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis
Python implementation of FSL's FIX tool for denoising
FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.
The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit
Reads Siemens .dat 'twix' raw data files. Python port of Philipp Ehses' Matlab tool mapVBVD.
The workshop would be split over three sessions of 2hrs duration over three consecutive weeks:
Fundamentals of image analysis with DL, Intermediate session and project sessions.
Pandas tutorial for the analysis group meeting on November 21
Code to accompany Uncertainty in denoising of MRSI using low rank methods, Clarke WT and Chiew M 2021.
MRS density matrix simulator