Explore projects

MRS basis spectra for WIN sequences generated using FSL-MRS's simulator.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Exploring, adapting, modifying the UK biobank imaging pipeline codes for the implementation on DPUK cohorts data

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Talks, practicals, and other materials for the 2020 WIN PyTreat

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Sample script for converting CURRY files to the BIDS format.

Matlab code to perform Hidden Markov modelling of entorhinal cortex optogenetic-fMRI.

a place for general things that I'd like to share with people (tutorials etc)

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Repository for code and materials from 'A macroscopic link between tract myelination and tract physiology during action reprogramming' by Lazari et al.