Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

The WIN open science tool to package up, and share data and analyses

Computational modelling course taught as part of the WIN graduate programme.

Python implementation of FSL's FIX tool for denoising

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

WMH and lesion segmentation tool

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

FSL release management infrastructure

files for the RSA tutorial

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Neonatal diffusion MRI (dMRI) data analysis pipeline