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Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.
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Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.
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Computational modelling course taught as part of the WIN graduate programme.
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This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.
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FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.
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Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism
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FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.
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Python GUI for the WIN escape room public engagement event
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strokeseg is a python package + command line program to identify stroke in clinical brain images.
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