Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme

repo of files sorted by each meeting

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

A newmat-like wrapper around the Armadillo linear algebra library (http://arma.sourceforge.net/)

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

The WIN open science tool to package up, and share data and analyses

Python implementation of FSL's FIX tool for denoising

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

FSL release management infrastructure

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

A citation analysis designed to ask whether neuroscience papers with human subjects are more likely to cite human than animal papers, and vice-versa

A safe space to play and practice using git(lab)

Declative pipelines based on Filetrees

Declative pipelines based on Filetrees

A GUI for the popular fslstats Command line program