Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

The WIN open science tool to package up, and share data and analyses

Computational modelling course taught as part of the WIN graduate programme.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Python implementation of FSL's FIX tool for denoising

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

FSL release management infrastructure

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.

Python GUI for the WIN escape room public engagement event

strokeseg is a python package + command line program to identify stroke in clinical brain images.