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Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme
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repo of files sorted by each meeting
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Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis
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FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford
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A newmat-like wrapper around the Armadillo linear algebra library (http://arma.sourceforge.net/)
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FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.
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The WIN open science tool to package up, and share data and analyses
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Python implementation of FSL's FIX tool for denoising
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This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.
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The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit
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FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.
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FSL release management infrastructure
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Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.
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A citation analysis designed to ask whether neuroscience papers with human subjects are more likely to cite human than animal papers, and vice-versa
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A safe space to play and practice using git(lab)
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Declative pipelines based on Filetrees
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Declative pipelines based on Filetrees
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A GUI for the popular fslstats Command line program