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FSL-pipe has been moved to https://git.fmrib.ox.ac.uk/fsl/fsl-pipe

Additional large downloads required for the dHCP neonatal fMRI pipeline

Guidelines for using the open-science GitLab group

Declative pipelines based on Filetrees

files for the RSA tutorial

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

Mendelian randomisation meets neuroimaging

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Code relating to reference: AFD Howard, J Mollink, M Kleinnijenhuis, M Pallebage-Gamarallage, M Bastiani, M Cottaar, KL Miller & S Jbabdi, Joint modelling of diffusion MRI and microscopy, Neuroimage, 2019.

Experimental paradigm from "Associative Learning of Social Value", Behrens et al., Nature 2008, coded in Presentation.

My first python package, random utilities

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Jekyll just-the-docs theme example. Served at https://open.win.ox.ac.uk/pages/cassag/just-the-docs/

FSL-MRS code for the 2021 diffusion weighted MRS workshop.