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FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

bet for clinical CT images

Tools for low rank denoising of MRSI.

This repository contains processing code and result files associated with the following publication: Cortical morphology and white matter tractography of three phylogenetically distant primates: Evidence for a simian elaboration

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Code used for the analyses presented in the paper "White matter hyperintensities classified according to intensity and spatial location reveal specific associations with cognitive performance" by Melazzini et al.,

Mendelian randomisation meets neuroimaging

FSLeyes, the FSL image viewer.

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

WIN Information Retrieval Engine

Download open access data sets from popular online repos. Part of WIN's open science initiative.

Collection of pipelines for T2w, DWI and QSM imaging for Merima's studies.

Educational material for the WIN Analysis Group

Jupyter notebook-based practicals for the 2018 WIN PyTreat