Explore projects

Personal utilities library (updated from mc_utils)

This repository contains processing code and result files associated with the following publication: Cortical morphology and white matter tractography of three phylogenetically distant primates: Evidence for a simian elaboration

Additive Signal Change inference tool.

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

A newmat-like wrapper around the Armadillo linear algebra library (http://arma.sourceforge.net/)

Diffusion models implemented in the cudimot framework. See https://users.fmrib.ox.ac.uk/~moisesf/cudimot/ for more details.

Code and pipeline for the extraction of fibre dispersion from MDE data

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Jupyter notebook-based practicals for the 2018 WIN PyTreat

Command line tool to scan a dataset and print a table highlighting gaps.

Collection of pipelines for T2w, DWI and QSM imaging for Merima's studies.