Explore projects

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

An fsleyes plugin for NIfTI-MRS data

Code to support the BigMac dataset: an open resource combining multi-contrast MRI and microscopy in a macaque brain.

Grid submission wrapper

Multimodal age-dependent templates (ADTs) derived from a Gaussian Process, which was trained on 37,330 UK Biobank individuals' deformation fields to OMM-1 and their corresponding ages.

A toolbox to localise common surgical targets using multimodal MRI

The FSL Python Library