Explore projects

these are a set of scripts that I use to evaluate PROFUMO results on BDI clusters, slowly tidying them up

Exploring, adapting, modifying the UK biobank imaging pipeline codes for the implementation on DPUK cohorts data

Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism

My copy of FSL/base

Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Pyfeeds tests for testing FSL

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Preprocessing weighted scans for preclinical Multi-Parameter Mapping

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.