Explore projects
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these are a set of scripts that I use to evaluate PROFUMO results on BDI clusters, slowly tidying them up
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Exploring, adapting, modifying the UK biobank imaging pipeline codes for the implementation on DPUK cohorts data
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Matlab-based simulation tool for the DANTE-SPACE sequence, using the extended phase graph (EPG) formalism
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Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme
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Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.
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BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).
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Preprocessing weighted scans for preclinical Multi-Parameter Mapping
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Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.
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Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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