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THIS REPOSITORY IS NO LONGER MAINTAINED - Docker images for FSLeyes testing are now stored in the fsl/fsleyes/fsleyes repository.

repo of files sorted by each meeting

Talks, practicals, and other materials for the 2020 WIN PyTreat

strokeseg is a python package + command line program to identify stroke in clinical brain images.

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

Talks, practicals, and other materials for the 2020 WIN PyTreat

Talks, practicals, and other materials for the 2020 WIN PyTreat

bet for clinical CT images

Educational material for the WIN Analysis Group

a place for general things that I'd like to share with people (tutorials etc)

WIN Information Retrieval Engine

Download open access data sets from popular online repos. Part of WIN's open science initiative.

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

CLI to download entire projects from openneuro.org

Code and pipeline for the extraction of fibre dispersion from MDE data

B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.