Explore projects

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Exploring, adapting, modifying the UK biobank imaging pipeline codes for the implementation on DPUK cohorts data

Triplanar U-Net Ensemble model for white matter hyperintensities segmentation

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Boilerplate code and utilities for pyTorch.

My first python package, random utilities

A growing and evolving collection of image processing scripts that are based on TIRL.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

FSL releases of ihuszar/tirl - new changes are to be manually added to the main branch. All other branches are for historical purposes only.

This project aims to transfer the old tbss code from bash script to python and leverage fsl-pipe and fsl file-tree for pipeline creation and file management.

strokeseg is a python package + command line program to identify stroke in clinical brain images.

stochastic PROFUMO (sPROFUMO), to be integrated within PROFUMO