Explore projects

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

Neonatal diffusion MRI (dMRI) data analysis pipeline

Command line tool to scan a dataset and print a table highlighting gaps.

Command line tool to scan a structured directory and print a table highlighting gaps.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Remove stupidly high intensities from MRI images which might negatively affect registration.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Fill each atlas region with any value.

FSLeyes, the FSL image viewer.

Fits gyral white matter fibre configuration with a continuous vector field

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Talks, practicals, and other materials for the 2020 WIN PyTreat

Tools for low rank denoising of MRSI.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.