Explore projects

Code replicating results from Tavor et al. 2016

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

a place for general things that I'd like to share with people (tutorials etc)

Pyfeeds tests for testing FSL

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Talks, practicals, and other materials for the 2020 WIN PyTreat

Talks, practicals, and other materials for the 2020 WIN PyTreat

Talks, practicals, and other materials for the 2020 WIN PyTreat

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Talks, practicals, and other materials for the 2020 WIN PyTreat