Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.
A newmat-like wrapper around the Armadillo linear algebra library (http://arma.sourceforge.net/)
Fill each atlas region with any value.
My copy of FSL/base
Scripts to sudo to a user maintaining X11 forwarding
WMH and lesion segmentation tool
Code to support the BigMac dataset: an open resource combining multi-contrast MRI and microscopy in a macaque brain.
UK Biobank imaging pipeline adaptations for use in a real-world memory clinic sample at the Oxford Brain Health Clinic
This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.