Make fsl_gen_3D work with extension-less images
As I understand, the recommended practice in FSL is to always reference images with out a specific nii
, nii.gz
or img
extension, allowing the code to be agnistic to the particular flavor of NIFTI currently in use.
When useing fsl_deface
however, I got an error with fsl_gen_3D
Error: Input image is not readable.
even though the image was present and readable. The problem had been that I had specified the image without an extension, and the check for readability was done directly with the supplied image. I think the solution is simple, just deleting that block, and let any readability issues get caught by the imtest
that follows (and that is compatabible with extensionless images filenames).
CC: @falmagro