doc/fsl.utils.image.roi.rst

+``fsl.utils.image.roi``
+=======================
+
+.. automodule:: fsl.utils.image.roi
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.rst → doc/fsl.utils.image.rst

-``fsl``
-=======
+``fsl.utils.image``
+===================
 
 .. toctree::
    :hidden:
 
-   fsl.data
-   fsl.scripts
-   fsl.utils
-   fsl.version
+   fsl.utils.image.resample
+   fsl.utils.image.roi
 
-.. automodule:: fsl
+.. automodule:: fsl.utils.image
     :members:
     :undoc-members:
     :show-inheritance:

doc/fsl.utils.naninfrange.rst

+``fsl.utils.naninfrange``
+=========================
+
+.. automodule:: fsl.utils.naninfrange
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.utils.parse_data.rst

+``fsl.utils.parse_data``
+========================
+
+.. automodule:: fsl.utils.parse_data
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.utils.rst

@@ -4,17 +4,26 @@
 .. toctree::
    :hidden:
 
+   fsl.utils.assertions
+   fsl.utils.bids
    fsl.utils.cache
-   fsl.utils.callfsl
+   fsl.utils.deprecated
+   fsl.utils.ensure
+   fsl.utils.filetree
+   fsl.utils.fslsub
    fsl.utils.idle
    fsl.utils.imcp
+   fsl.utils.image
    fsl.utils.memoize
+   fsl.utils.meta
+   fsl.utils.naninfrange
    fsl.utils.notifier
    fsl.utils.path
+   fsl.utils.parse_data
    fsl.utils.platform
+   fsl.utils.run
    fsl.utils.settings
    fsl.utils.tempdir
-   fsl.utils.transform
    fsl.utils.weakfuncref
 
 .. automodule:: fsl.utils

doc/fsl.utils.run.rst

+``fsl.utils.run``
+=================
+
+.. automodule:: fsl.utils.run
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.utils.tempdir.rst

-``fsl.utils.temdir``
-====================
+``fsl.utils.tempdir``
+=====================
 
 .. automodule:: fsl.utils.tempdir
     :members:

doc/fsl.wrappers.avwutils.rst

+``fsl.wrappers.avwutils``
+=========================
+
+.. automodule:: fsl.wrappers.avwutils
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bedpostx.rst

+``fsl.wrappers.bedpostx``
+=========================
+
+.. automodule:: fsl.wrappers.bedpostx
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bet.rst

+``fsl.wrappers.bet``
+====================
+
+.. automodule:: fsl.wrappers.bet
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bianca.rst

+``fsl.wrappers.bianca``
+=======================
+
+.. automodule:: fsl.wrappers.bianca
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.cluster_commands.rst

+``fsl.wrappers.cluster_commands``
+=================================
+
+.. automodule:: fsl.wrappers.cluster_commands
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.dtifit.rst

+``fsl.wrappers.dtifit``
+=======================
+
+.. automodule:: fsl.wrappers.dtifit
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.utils.callfsl.rst → doc/fsl.wrappers.eddy.rst

-``fsl.utils.callfsl``
+``fsl.wrappers.eddy``
 =====================
 
-.. automodule:: fsl.utils.callfsl
+.. automodule:: fsl.wrappers.eddy
     :members:
     :undoc-members:
     :show-inheritance:

doc/fsl.wrappers.epi_reg.rst

+``fsl.wrappers.epi_reg``
+========================
+
+.. automodule:: fsl.wrappers.epi_reg
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fast.rst

+``fsl.wrappers.fast``
+=====================
+
+.. automodule:: fsl.wrappers.fast
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.feat.rst

+``fsl.wrappers.feat``
+=====================
+
+.. automodule:: fsl.wrappers.feat
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.first.rst

+``fsl.wrappers.first``
+======================
+
+.. automodule:: fsl.wrappers.first
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.flirt.rst

+``fsl.wrappers.flirt``
+======================
+
+.. automodule:: fsl.wrappers.flirt
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fnirt.rst

+``fsl.wrappers.fnirt``
+======================
+
+.. automodule:: fsl.wrappers.fnirt
+    :members:
+    :undoc-members:
+    :show-inheritance: