doc/fsl.scripts.Vest2Text.rst

+``fsl.scripts.Vest2Text``
+=========================
+
+.. automodule:: fsl.scripts.Vest2Text
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.fsl_abspath.rst

+``fsl.scripts.fsl_abspath``
+===========================
+
+.. automodule:: fsl.scripts.fsl_abspath
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.imln.rst

+``fsl.scripts.imln``
+====================
+
+.. automodule:: fsl.scripts.imln
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.imrm.rst

+``fsl.scripts.imrm``
+====================
+
+.. automodule:: fsl.scripts.imrm
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.imtest.rst

+``fsl.scripts.imtest``
+======================
+
+.. automodule:: fsl.scripts.imtest
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.remove_ext.rst

+``fsl.scripts.remove_ext``
+==========================
+
+.. automodule:: fsl.scripts.remove_ext
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.rst

@@ -5,15 +5,26 @@
    :hidden:
 
    fsl.scripts.atlasq
+   fsl.scripts.fsl_abspath
    fsl.scripts.fsl_apply_x5
    fsl.scripts.fsl_convert_x5
    fsl.scripts.fsl_ents
    fsl.scripts.imcp
    fsl.scripts.imglob
+   fsl.scripts.imln
    fsl.scripts.immv
+   fsl.scripts.imrm
+   fsl.scripts.imtest
+   fsl.scripts.remove_ext
    fsl.scripts.resample_image
+   fsl.scripts.Text2Vest
+   fsl.scripts.Vest2Text
 
-.. automodule:: fsl.scripts
-    :members:
-    :undoc-members:
-    :show-inheritance:
+
+The ``fsl.scripts`` package contains all of the executable scripts provided by
+``fslpy``, and other python-based FSL packages.
+
+
+The ``fsl.scripts`` package is a `native namespace package
+<https://packaging.python.org/guides/packaging-namespace-packages/>`_, which
+means that it can be used by other Python libraries.

doc/fsl.utils.bids.rst

+``fsl.utils.bids``
+==================
+
+.. automodule:: fsl.utils.bids
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.utils.rst

@@ -5,6 +5,7 @@
    :hidden:
 
    fsl.utils.assertions
+   fsl.utils.bids
    fsl.utils.cache
    fsl.utils.deprecated
    fsl.utils.ensure

doc/fsl.wrappers.avwutils.rst

+``fsl.wrappers.avwutils``
+=========================
+
+.. automodule:: fsl.wrappers.avwutils
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bedpostx.rst

+``fsl.wrappers.bedpostx``
+=========================
+
+.. automodule:: fsl.wrappers.bedpostx
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bianca.rst

+``fsl.wrappers.bianca``
+=======================
+
+.. automodule:: fsl.wrappers.bianca
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.cluster_commands.rst

+``fsl.wrappers.cluster_commands``
+=================================
+
+.. automodule:: fsl.wrappers.cluster_commands
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.dtifit.rst

+``fsl.wrappers.dtifit``
+=======================
+
+.. automodule:: fsl.wrappers.dtifit
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.epi_reg.rst

+``fsl.wrappers.epi_reg``
+========================
+
+.. automodule:: fsl.wrappers.epi_reg
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.feat.rst

+``fsl.wrappers.feat``
+=====================
+
+.. automodule:: fsl.wrappers.feat
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.first.rst

+``fsl.wrappers.first``
+======================
+
+.. automodule:: fsl.wrappers.first
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fsl_sub.rst

+``fsl.wrappers.fsl_sub``
+========================
+
+.. automodule:: fsl.wrappers.fsl_sub
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fslstats.rst

+``fsl.wrappers.fslstats``
+=========================
+
+.. automodule:: fsl.wrappers.fslstats
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.oxford_asl.rst

+``fsl.wrappers.oxford_asl``
+===========================
+
+.. automodule:: fsl.wrappers.oxford_asl
+    :members:
+    :undoc-members:
+    :show-inheritance: