doc/fsl.scripts.Vest2Text.rst

+``fsl.scripts.Vest2Text``
+=========================
+
+.. automodule:: fsl.scripts.Vest2Text
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.fsl_abspath.rst

+``fsl.scripts.fsl_abspath``
+===========================
+
+.. automodule:: fsl.scripts.fsl_abspath
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.imln.rst

+``fsl.scripts.imln``
+====================
+
+.. automodule:: fsl.scripts.imln
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.imrm.rst

+``fsl.scripts.imrm``
+====================
+
+.. automodule:: fsl.scripts.imrm
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.imtest.rst

+``fsl.scripts.imtest``
+======================
+
+.. automodule:: fsl.scripts.imtest
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.remove_ext.rst

+``fsl.scripts.remove_ext``
+==========================
+
+.. automodule:: fsl.scripts.remove_ext
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.scripts.rst

@@ -5,15 +5,26 @@
    :hidden:
 
    fsl.scripts.atlasq
+   fsl.scripts.fsl_abspath
    fsl.scripts.fsl_apply_x5
    fsl.scripts.fsl_convert_x5
    fsl.scripts.fsl_ents
    fsl.scripts.imcp
    fsl.scripts.imglob
+   fsl.scripts.imln
    fsl.scripts.immv
+   fsl.scripts.imrm
+   fsl.scripts.imtest
+   fsl.scripts.remove_ext
    fsl.scripts.resample_image
+   fsl.scripts.Text2Vest
+   fsl.scripts.Vest2Text
 
-.. automodule:: fsl.scripts
-    :members:
-    :undoc-members:
-    :show-inheritance:
+
+The ``fsl.scripts`` package contains all of the executable scripts provided by
+``fslpy``, and other python-based FSL packages.
+
+
+The ``fsl.scripts`` package is a `native namespace package
+<https://packaging.python.org/guides/packaging-namespace-packages/>`_, which
+means that it can be used by other Python libraries.

doc/fsl.wrappers.avwutils.rst

+``fsl.wrappers.avwutils``
+=========================
+
+.. automodule:: fsl.wrappers.avwutils
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bedpostx.rst

+``fsl.wrappers.bedpostx``
+=========================
+
+.. automodule:: fsl.wrappers.bedpostx
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bianca.rst

+``fsl.wrappers.bianca``
+=======================
+
+.. automodule:: fsl.wrappers.bianca
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.cluster_commands.rst

+``fsl.wrappers.cluster_commands``
+=================================
+
+.. automodule:: fsl.wrappers.cluster_commands
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.dtifit.rst

+``fsl.wrappers.dtifit``
+=======================
+
+.. automodule:: fsl.wrappers.dtifit
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.epi_reg.rst

+``fsl.wrappers.epi_reg``
+========================
+
+.. automodule:: fsl.wrappers.epi_reg
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.feat.rst

+``fsl.wrappers.feat``
+=====================
+
+.. automodule:: fsl.wrappers.feat
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.first.rst

+``fsl.wrappers.first``
+======================
+
+.. automodule:: fsl.wrappers.first
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fsl_sub.rst

+``fsl.wrappers.fsl_sub``
+========================
+
+.. automodule:: fsl.wrappers.fsl_sub
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fslstats.rst

+``fsl.wrappers.fslstats``
+=========================
+
+.. automodule:: fsl.wrappers.fslstats
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.oxford_asl.rst

+``fsl.wrappers.oxford_asl``
+===========================
+
+.. automodule:: fsl.wrappers.oxford_asl
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.randomise.rst

+``fsl.wrappers.randomise``
+==========================
+
+.. automodule:: fsl.wrappers.randomise
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.rst

@@ -4,16 +4,29 @@
 .. toctree::
    :hidden:
 
+   fsl.wrappers.avwutils
+   fsl.wrappers.bedpostx
    fsl.wrappers.bet
+   fsl.wrappers.bianca
+   fsl.wrappers.cluster_commands
+   fsl.wrappers.dtifit
    fsl.wrappers.eddy
+   fsl.wrappers.epi_reg
    fsl.wrappers.fast
+   fsl.wrappers.feat
+   fsl.wrappers.first
    fsl.wrappers.flirt
    fsl.wrappers.fnirt
-   fsl.wrappers.fslmaths
    fsl.wrappers.fsl_anat
+   fsl.wrappers.fsl_sub
+   fsl.wrappers.fslmaths
+   fsl.wrappers.fslstats
    fsl.wrappers.fugue
    fsl.wrappers.melodic
    fsl.wrappers.misc
+   fsl.wrappers.oxford_asl
+   fsl.wrappers.randomise
+   fsl.wrappers.tbss
    fsl.wrappers.wrapperutils
 
 .. automodule:: fsl.wrappers