doc/fsl.utils.parse_data.rst

+``fsl.utils.parse_data``
+========================
+
+.. automodule:: fsl.utils.parse_data
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.utils.rst

@@ -5,20 +5,25 @@
    :hidden:
 
    fsl.utils.assertions
+   fsl.utils.bids
    fsl.utils.cache
+   fsl.utils.deprecated
    fsl.utils.ensure
+   fsl.utils.filetree
+   fsl.utils.fslsub
    fsl.utils.idle
    fsl.utils.imcp
+   fsl.utils.image
    fsl.utils.memoize
    fsl.utils.meta
    fsl.utils.naninfrange
    fsl.utils.notifier
    fsl.utils.path
+   fsl.utils.parse_data
    fsl.utils.platform
    fsl.utils.run
    fsl.utils.settings
    fsl.utils.tempdir
-   fsl.utils.transform
    fsl.utils.weakfuncref
 
 .. automodule:: fsl.utils

doc/fsl.utils.tempdir.rst

-``fsl.utils.temdir``
-====================
+``fsl.utils.tempdir``
+=====================
 
 .. automodule:: fsl.utils.tempdir
     :members:

doc/fsl.wrappers.avwutils.rst

+``fsl.wrappers.avwutils``
+=========================
+
+.. automodule:: fsl.wrappers.avwutils
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bedpostx.rst

+``fsl.wrappers.bedpostx``
+=========================
+
+.. automodule:: fsl.wrappers.bedpostx
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.bianca.rst

+``fsl.wrappers.bianca``
+=======================
+
+.. automodule:: fsl.wrappers.bianca
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.cluster_commands.rst

+``fsl.wrappers.cluster_commands``
+=================================
+
+.. automodule:: fsl.wrappers.cluster_commands
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.dtifit.rst

+``fsl.wrappers.dtifit``
+=======================
+
+.. automodule:: fsl.wrappers.dtifit
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.epi_reg.rst

+``fsl.wrappers.epi_reg``
+========================
+
+.. automodule:: fsl.wrappers.epi_reg
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fast.rst

+``fsl.wrappers.fast``
+=====================
+
+.. automodule:: fsl.wrappers.fast
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.feat.rst

+``fsl.wrappers.feat``
+=====================
+
+.. automodule:: fsl.wrappers.feat
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.first.rst

+``fsl.wrappers.first``
+======================
+
+.. automodule:: fsl.wrappers.first
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fsl_anat.rst

+``fsl.wrappers.fsl_anat``
+=========================
+
+.. automodule:: fsl.wrappers.fsl_anat
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fsl_sub.rst

+``fsl.wrappers.fsl_sub``
+========================
+
+.. automodule:: fsl.wrappers.fsl_sub
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.fslstats.rst

+``fsl.wrappers.fslstats``
+=========================
+
+.. automodule:: fsl.wrappers.fslstats
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.oxford_asl.rst

+``fsl.wrappers.oxford_asl``
+===========================
+
+.. automodule:: fsl.wrappers.oxford_asl
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.randomise.rst

+``fsl.wrappers.randomise``
+==========================
+
+.. automodule:: fsl.wrappers.randomise
+    :members:
+    :undoc-members:
+    :show-inheritance:

doc/fsl.wrappers.rst

@@ -4,14 +4,29 @@
 .. toctree::
    :hidden:
 
+   fsl.wrappers.avwutils
+   fsl.wrappers.bedpostx
    fsl.wrappers.bet
+   fsl.wrappers.bianca
+   fsl.wrappers.cluster_commands
+   fsl.wrappers.dtifit
    fsl.wrappers.eddy
+   fsl.wrappers.epi_reg
+   fsl.wrappers.fast
+   fsl.wrappers.feat
+   fsl.wrappers.first
    fsl.wrappers.flirt
    fsl.wrappers.fnirt
+   fsl.wrappers.fsl_anat
+   fsl.wrappers.fsl_sub
    fsl.wrappers.fslmaths
+   fsl.wrappers.fslstats
    fsl.wrappers.fugue
    fsl.wrappers.melodic
    fsl.wrappers.misc
+   fsl.wrappers.oxford_asl
+   fsl.wrappers.randomise
+   fsl.wrappers.tbss
    fsl.wrappers.wrapperutils
 
 .. automodule:: fsl.wrappers

doc/fsl.wrappers.tbss.rst

+``fsl.wrappers.tbss``
+=====================
+
+.. automodule:: fsl.wrappers.tbss
+    :members:
+    :undoc-members:
+    :show-inheritance: