RF: Use `mc/prefiltered_func_data_mcf_conf_hp.nii.gz` as motion confounds if it exists; save classifier probabilities to `fix4melview` file

• If the mc/prefiltered_func_data_mcf_conf_hp.nii.gz already exists in the input data directory, use it as the motion confounds, instead of loading and high-pass filtering the MCFLIRT results from mc/prefiltered_func_data_mcf.par. This is required to support HCP scripts which perform their own filtering of motion confounds, and save them to mc/prefiltered_...._hp.nii.gz. Reported on the FSL mailing list: https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=FSL;199b80ab.2409
• Classifier probabilities are now saved to the fix4melview label file. The original FIX was adjusted in 1.069 to do this, but this feature was never ported to pyfix. This was probably because the version of FIX on the FMRIB cluster was never updated beyond version 1.067.

changed the description

added 1 commit

• acad8987 - RF: If mc/prefiltered_func_data_mcf_conf_hp.nii.gz already exists in the input

Compare with previous version

added 4 commits

• 8cd7fd42 - RF: Save classifier probabilities to fix4melview file
• 5a8f869e - MNT: version
• 5b30dd4c - MNT: Update fslpy pin for new saveLabelFile(probabilities) option
• 5f58db39 - DOC: Changelog

Compare with previous version

changed title from RF: Use mc/prefiltered_func_data_mcf_conf_hp.nii.gz as motion confounds if it exists to RF: Use mc/prefiltered_func_data_mcf_conf_hp.nii.gz as motion confounds if it exists{+; save classifier probabilities to fix4melview file+}

changed the description

added 1 commit

• 0b9adae7 - TEST: Test handling of motion parameter estimates

Compare with previous version

enabled an automatic merge when the pipeline for 0b9adae7 succeeds

aborted the automatic merge because the source branch was updated. Learn more.

added 1 commit

• 48cf19e4 - TEST: Test handling of motion parameter estimates

Compare with previous version

added 1 commit

• a5fa0684 - RF: Output filtered_func_data.ica path (melodic), rather than <analysis>.ica

Compare with previous version

mentioned in commit e33f4f1c

merged