Skip to content

RF: Use `mc/prefiltered_func_data_mcf_conf_hp.nii.gz` as motion confounds if it exists; save classifier probabilities to `fix4melview` file

Paul McCarthy requested to merge rf/motparams into main
  • If the mc/prefiltered_func_data_mcf_conf_hp.nii.gz already exists in the input data directory, use it as the motion confounds, instead of loading and high-pass filtering the MCFLIRT results from mc/prefiltered_func_data_mcf.par. This is required to support HCP scripts which perform their own filtering of motion confounds, and save them to mc/prefiltered_...._hp.nii.gz. Reported on the FSL mailing list: https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=FSL;199b80ab.2409
  • Classifier probabilities are now saved to the fix4melview label file. The original FIX was adjusted in 1.069 to do this, but this feature was never ported to pyfix. This was probably because the version of FIX on the FMRIB cluster was never updated beyond version 1.067.
Edited by Paul McCarthy

Merge request reports

Loading