Tumour seg

Changes to make sure that the spinal cord mask also contains potential lesion/tumour

spinal_dmri_pipeline/scripts/make_report.py

@@ -220,7 +220,7 @@ import argparse
 
 def main():
     p = argparse.ArgumentParser('Create Spinal Report')
-    p.add_argument('--dir',required=True,  type=str, help='analysis folder')
+    p.add_argument('dir', type=str, help='analysis folder')
     
     a = p.parse_args()