Explore projects

Command line tool to scan a dataset and print a table highlighting gaps.

Neonatal diffusion MRI (dMRI) data analysis pipeline

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

The FSL Python Library

get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank

Triplanar U-Net Ensemble model for white matter hyperintensities segmentation

Talks, practicals, and other materials for the 2020 WIN PyTreat

strokeseg is a python package + command line program to identify stroke in clinical brain images.

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

Talks, practicals, and other materials for the 2020 WIN PyTreat

Talks, practicals, and other materials for the 2020 WIN PyTreat

WIN Information Retrieval Engine

Download open access data sets from popular online repos. Part of WIN's open science initiative.

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

CLI to download entire projects from openneuro.org

Code and pipeline for the extraction of fibre dispersion from MDE data

B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.